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Convert Microscopy Images to OME-Zarr using BAND

Files on BAND

Convert Microscopy Images to OME-Zarr using BAND

Home
Getting Started
Getting Started
- Log in to BAND
- Files on BAND
Exercises
Exercises
- 1. Basic SLURM Commands
- 2. Local Conversion
- 3. Parallel Conversion with EuBI-Bridge
- 4. Parallel Conversion with Nextflow
- 5. Validate OME-Zarr
- 6. Transfer Data From/To BAND
  6. Transfer Data From/To BAND
References

Files on BAND

Example image data: /scratch/common/data/
Conda environment: /scratch/miniforge3/envs/eubizarr
SLURM binaries: /opt/slurm-23.02.8/bin/